Research · DAF Website

24

20

Federated inference and belief sharing

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Neuroscience & Biobehavioral Reviews

⁠

10.1016/j.neubiorev.2023.105500

Friston_Federated_2023.pdf

Shared Protentions in Multi-Agent Active Inference

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Entropy

⁠

10.3390/e26040303

entropy-26-00303.pdf

Aligning Active Inference Ontology to SUMO

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Zenodo

⁠

10.5281/zenodo.11459322

Aligning Active Inference Ontology to SUMO.pdf

Bridging gaps in image meme research: A multidisciplinary paradigm for scaling up qualitative analyses

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JASIS&T

⁠

10.1002/asi.24900

Asso for Info Science Tech - 2024 - Mascarenhas - Bridging gaps in image meme research A multidisciplinary paradigm for.pdf

Why Paleolithic Rockstars were both enigmatic and sporadic: A Comment on: ‘Snakes and ladders’ in paleoanthropology: From cognitive surprise to skillfulness a million years ago

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Phys. Life Reviews

⁠

10.1016/j.plrev.2024.04.010

Four-fold Fields of Quantum Dreams

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Zenodo

⁠

10.5281/zenodo.10798145

FourFoldFields _Friedman_Tickles_v1_3-8-2024.pdf

Way Finding in the Infinite Imaginarium: Juxtaposing Epistemic Tempos and Modes

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Zenodo

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10.5281/zenodo.10601082

WayFinding_InfiniteImaginarium_v1_DAF_1-31-2024.pdf

Push and Pull: A priming sequence

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Zenodo

⁠

10.5281/zenodo.10659375

PushPull_v1_DAF_2-14-2024.pdf

Chemical and transcriptomic diversity do not correlate with ascending levels of social complexity in the insect order Blattodea

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Ecology & Evolution

⁠

10.1002/ece3.70063

Ecology and Evolution - 2024 - Golian - Chemical and transcriptomic diversity do not correlate with ascending levels of.pdf

Comments Submitted by BlockScience, University of Washington APL Information Risk and Synthetic Intelligence Research Initiative (IRSIRI), Cognitive Security and Education Forum (COGSEC), and the Active Inference Institute (AII) to the Networking and Information Technology Research and Development National Coordination Office's Request for Comment on The Creation of a National Digital Twins R&D Strategic Plan NITRD-2024-13379

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Zenodo

⁠

10.5281/zenodo.13273681

BLOCKSCIENCE-UWAPL-COGSEC-AII_NITRD-2024-1337.pdf

Enhancing Population-based Search with Active Inference

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Arxiv

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10.48550/arXiv.2408.09548

2408.09548v1.pdf

FarmWorks: Decentralized AI Agents for Personalized Solutions

Zenodo

10.5281/zenodo.13754585

FarmWorks_v1_9-12-2024.pdf

Temporal Depth in a Coherent Self and in Depersonalization: Theoretical Model

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OSF

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10.31219/osf.io/gjxhn

Dissociaton-first-paper-preprint-12k.pdf

The Active Inference Institute & Active Inference Ecosystem (version 2, 2024 snapshot)

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Zenodo

⁠

10.5281/zenodo.14108991

Active_Inference_Institute-Ecosystem_11-12-2024_v2.pdf

Writing on

Curio Cards

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for the “On NFT” book

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Taschen

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978-3-8365-9970-2

watermarks_ce_nft_60080_0023.pdf

MathArt Stream #8 ~ William Blake and Active Inference

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YouTube

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10.5281/zenodo.13711301

WilliamBlake_MathArt-Stream_DAF_9_6_2024.pdf

Transcript of: “Sensemaking Federation: Exploring the Frontiers of Digital Innovation”

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Zenodo

⁠

10.5281/zenodo.14574046

Sensemaking-Federation_Scenius_Transcript_12-5-2024_v1 .pdf

Biofirm Development with First Principles First and the Active Inference Institute at the Applied Active Inference Symposium 2024

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Zenodo

⁠

10.5281/zenodo.14861595

FORMINDEX: FORMIS INtegrated Database EXploration

Github

10.5281/zenodo.13927034

FORMINDEX_10_13_2024-compressed.pdf

Archival snapshot of: Systems Science Education & Knowledge Engineering group (2022-2024)

Coda

10.5281/zenodo.14057149

Education_Knowledge-Engineering_11-8-2024_compressed.pdf

23

26

A single-pheromone model accounts for empirical patterns of ant colony foraging previously modeled using two pheromones

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Cognitive Systems Research

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10.1016/j.cogsys.2023.02.005

Saund_Friedman_2023.pdf

A variational synthesis of evolutionary and developmental dynamics

Entropy

10.3390/e25070964

entropy-25-00964.pdf

ATLAS: A Question Oriented Approach to the Use of Pattern Languages in Knowledge Management

Zenodo

10.5281/zenodo.10296601

ATLAS_V-1-0_12-7-23.pdf

Experimental Entomology in the Age of Video

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JoVE

⁠

e65002

Friedman_JoVe_2023.pdf

Generalized Notation Notation for Active Inference Models

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Zenodo

⁠

10.5281/zenodo.7803328

GNN_v1_April5_2023_Smekal_Friedman.pdf

Cognitive Sovereignty & Active Inference in the State of Exception

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Zenodo

⁠

10.5281/zenodo.10038232

CognitiveSovereignty_ActiveInference_StateOf_Exception_v1-1.pdf

Open Access science needs Open Science Sensemaking (OSSm): open infrastructure for sharing scientific sensemaking data

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MetaArXiv

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10.31222/osf.io/9nb3u

open_science_sensemaking.pdf

To comment or not to comment, that is the question!: Comment on “To copy or not to copy?...”

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Physics of Life Reviews

⁠

10.1016/j.plrev.2023.06.002

ToCommentOrNotToComment_Tickles_Friedman_2023.pdf

Generative Research Teams: Active Inference Compositions For Research and Meta-Science

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Zenodo

⁠

10.5281/zenodo.8164667

GenerativeResearchTeams_7_19_2023.pdf

The Active Inference Institute and Active Inference Ecosystem

⁠

Zenodo

⁠

10.5281/zenodo.8266281

ActiveInference_Institute-Ecosystem_2023_v1-1.pdf

A snapshot and pipeline for tissue-specific gene expression meta-analysis in honey bees (Apis mellifera)

Zenodo

10.5281/zenodo.10400744

Apis-seq_v1_12_18_2023.pdf

An Account of Active Inference Modeling

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Zenodo

⁠

10.5281/zenodo.8415313

An Account of Active Inference Modeling v1.pdf

Distributed Science - The Scientific Process as Multi-Scale Active Inference

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OSF

⁠

10.31219/osf.io/dnw5k

Distributed Science.pdf

The Properties, Processes, and Perspectives Inter-Framework (P3IF): Multiplexing interdisciplinary requirements frameworks to manage information risk and foster cognitive security

Zenodo

10.5281/zenodo.10034512

TAAB-P3IF_v1_10.5281_zenodo.10034512.pdf

A guided tour through the spaces of particular “minds”: A Comment on “Path integrals, particular kinds, and strange things”

⁠

Phys. Life Reviews

⁠

10.1016/j.plrev.2023.11.001

Rahmjoo_Friedman_2023_PathIntegrals.pdf

Enhanced NSF Postdoctoral Reporting via Synthetic Intelligence Language Processing

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Zenodo

⁠

10.5281/zenodo.10160656

Enhanced NSF Postdoctoral Reporting via Synthetic Intelligence Language Processing (1).pdf

Comments on AI Accountability Policy Submitted to NTIA Docket 2023-0005-0001 by IRSIRI, AII, PFH, and COGSEC

NTIA

10.5281/zenodo.8025957

NTIA_6-11-23_IRSIRI-AII-PIVOT-COGSEC.pdf

A Natural AI Based on The Science of Computational Physics, Biology and Neuroscience: Policy and Societal Significance

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Zenodo

⁠

10.5281/zenodo.10360148

12-11-2023_Natural_AI_Letter_v1.pdf

William Blake & Buckminster Fuller: Lives in Juxtaposition (A study in Comprehensivity)

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Zenodo

⁠

10.5281/zenodo.7514368

Blake-Fuller_Lives_in_Juxtaposition-DAF-2023.pdf

Monitoring memetic sense-making across digital publics: Combining rhetorical analysis and ecological frameworks for gathering and analyzing image-memes

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JASIST

⁠

None

Of Ants & Aging

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Curing Aging 2023

⁠

10.5281/zenodo.7855582

DAF_Ants_Aging_4_22_2023.pdf

Modern Nostr Index Card-based Knowledge Engineering

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Zenodo

⁠

10.5281/zenodo.8118156

Index_Card_7_5_2023.pdf

Slides for Iris

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Zenodo

⁠

10.5281/zenodo.7838653

Slides for Iris April 17 2023.pdf

Postdoc review (2020-2023) ~ September 25, 2023

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Zenodo

⁠

10.5281/zenodo.8377988

DAF_Postdoc_Summary_9_25_2023.pdf

Active Blockference: cadCAD with Active Inference for cognitive systems modeling

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IWAI 3

⁠

10.1007/978-3-031-28719-0_10

Active Blockference _ IWAI 2022 Poster.pdf

Transcript of Chris Fields, "Physics as Information Processing" course in 2023

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Zenodo

⁠

10.5281/zenodo.10447642

ChrisFields_ActInfInst_Physics2023_AllTranscripts_v1.pdf

22

11

From Users to (Sense)Makers: On the Pivotal Role of Stigmergic Social Annotation in the Quest for Collective Sensemaking

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Hypertext ‘22

⁠

10.48550/arXiv.2205.06345

Tamari_Friedman_et_al_2022.pdf

Tracking Public Sensemaking through Rhetorical Annotation of Image Memes

⁠

Zenodo

⁠

10.5281/zenodo.6904427

ECOMEME2-v1.0.pdf

An Active Inference Ontology for Decentralized Science: from Situated Sensemaking to the Epistemic Commons

⁠

Zenodo

⁠

10.5281/zenodo.6320574

v3_ActInf-DeSci-AEOS-2022.pdf

TrustFinder: Recommendations for a Community-Based System for Finding Trusted Sources and Evaluating Claims

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Zenodo

⁠

10.5281/zenodo.7093837

VIE-IG_1.pdf

Predictive Processing Interpretation of the Mirror Test and Implications of a Reflection Prediction for Human Cognition

⁠

Zenodo

⁠

10.5281/zenodo.7377256

Predictive Processing Interpretation of the Mirror Test.pdf

On free will or the lack thereof

⁠

ALIUS Bulletin

⁠

10.5281/zenodo.7394901

ALIUS Interview-Robert Sapolsky (2022).pdf

Catechism for: "Towards Active Diffusion: A Tale of Multiple (den)Cities"

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Zenodo

⁠

10.5281/zenodo.7443848

Active Diffusion Catechism.pdf

The Free Energy Principle & Active Inference: a Systematic Literature Analysis

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Zenodo

⁠

10.5281/zenodo.7449368

KnightCordesFriedman_2022_ActInf_FEP_Literature_v1.pdf

Systems Modeling and Cognitive Audits for Hypercert Ecosystems

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Zenodo

⁠

10.5281/zenodo.7626769

AII _ Blockference _ Protocol Labs Research RFP.pdf

Structuring the Information Commons: Open Standards and Cognitive Security

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Book by COGSEC.org

⁠

978-1-7364269-3-7

COGSEC2022-StructuringtheInformationCommons.pdf

Book of Love

⁠

Collaborative art book

⁠

None

Book of Love 2021-2022.pdf

21

9

Active Inferants: An Active Inference Framework for Ant Colony Behavior

⁠

Front. Behav. Neurosci.

⁠

10.3389/fnbeh.2021.647732

Friedman_2021_InferAnts.pdf

Active Inference in Modeling Conflict

⁠

Zenodo

⁠

10.5281/zenodo.5759807

AIC v1_2.pdf

Digital Rhetorical Ecosystem Analysis: Sensemaking of Digital Memetic Discourse

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Zenodo

⁠

10.5281/zenodo.5573947

ECOMEME v1.1.pdf

Narrative Information Management

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Zenodo

⁠

10.5281/zenodo.5573287

NIM21 v1.1.pdf

Collaborative Writing for Catechism-Based Teams

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Zenodo

⁠

10.5281/zenodo.4633921

C3PO.pdf

Knowledge Management Archipelago

⁠

Zenodo

⁠

10.5281/zenodo.5034809

KnowledgeManagementArchipelago_1_0.pdf

Narrative Information Ecosystems: Conflict and Trust on the Endless Frontier

⁠

Book by COGSEC.org

⁠

978-1-7364269-2-0

NIE_21_Cordes_Friedman.pdf

The Facilitator's Catechism Playbook

⁠

Zenodo

⁠

10.5281/zenodo.4579414

FaciliatorsCatechismPlaybook.pdf

Innovator’s Digital Playbook

⁠

Zenodo

⁠

978-0-578-31739-7

Innovators-Digital-Playbook.pdf

20

13

The Innovator’s Catechism

⁠

Zenodo

⁠

10.5281/zenodo.4383230

The Innovators Catechism.pdf

Reimagining Maps

⁠

Zenodo

⁠

10.5281/zenodo.4170026

Reimagining Maps.pdf

The Facilitator's Catechism

⁠

Zenodo

⁠

10.5281/zenodo.4203765

The Facilitators Catechismv2.pdf

The neuroscience of decision making

⁠

ALIUS Bulletin

⁠

10.34700/8pg4-0h12

theneuroscienceofdecisionmaking_tdhanks.pdf

Active Inference & Behavior Engineering for Teams

⁠

Zenodo

⁠

10.5281/zenodo.4021163

AIN1_Act_Inf_Narratives_v1.pdf

Infinite Games for Infinite Teams

⁠

COGSEC / Polyplexus

⁠

None

infinite_games_for_infinite_teams.pdf

Distributed physiology and the molecular basis of social life in eusocial insects

⁠

Hormones & Behavior

⁠

10.1016/j.yhbeh.2020.104757

Friedman_DistributedPhysiology_2020.pdf

Emergent Teams for Complex Threats

⁠

Zenodo

⁠

10.5281/zenodo.3986085

CordesFriedman2020_Emergent_Teams.pdf

Gene expression variation in the brains of harvester ant foragers is associated with collective behavior

⁠

Communications Biology

⁠

10.1038/s42003-020-0813-8

Friedman_York_PogoGeneExpress_2020.pdf

Measurement of natural variation of neurotransmitter tissue content in red harvester ant brains among different colonies.

⁠

Analytical and Bioanalytical Chemistry

⁠

10.1007/s00216-019-02355-3

Shin2020_Article_MeasurementOfNeurotransmitters.pdf

The Great Preset: Remote Teams and Operational Art

⁠

Book by COGSEC.org

⁠

978-1-7364269-0-6

GreatPreset_Friedman_Cordes_2020.pdf

How to use Keybase for remote teams

⁠

Udemy

⁠

Communication for Remote Teams

⁠

Udemy

⁠

19

4

Dennett Explained

⁠

ALIUS Bulletin

⁠

10.34700/7gkw-zh08

ALIUS_bulletin03-dennett_2019.pdf

The ant colony as a test for scientific theories of consciousness

⁠

Synthese

⁠

10.1007/s11229-019-02130-y

Friedman-Søvik2021_Article_TheAntColonyAsATestForConsciousness.pdf

The physiology of forager hydration and variation among harvester ant (Pogonomyrmex barbatus) colonies in collective foraging

⁠

Science Reports

⁠

10.1038/s41598-019-41586-3

Friedman_2019_Pogo_Humidity.pdf

Behavioral, Physiological, and Transcriptomic Variation Among Colonies of the Red Harvester Ant (Pogonomyrmex barbatus)

⁠

PhD Dissertation

⁠

http://purl.stanford.edu/pb813wm1484

Friedman_2019_PhD_Dissertation_Overview.pdf

18

5

The Role of Dopamine in the Collective Regulation of Foraging in Harvester Ants

⁠

iScience.

⁠

10.1016/j.isci.2018.09.001

Friedman_2018_Dopamine_Foraging_Pogo.pdf

Foraging behavior and locomotion of the invasive Argentine ant from winter aggregations

⁠

PLoS One

⁠

10.1371/journal.pone.0202117

Burford_2018_Argentine_Foraging.pdf

Partner Pen Play in Parallel (PPPiP): A New PPPiParadigm for Relationship Improvement

⁠

Arts

⁠

10.3390/arts7030039

PPPiP_2018_Mikhailova_Friedman.pdf

Of woodlice and men: A Bayesian account of cognition, life and consciousness

⁠

ALIUS Bulletin

⁠

10.34700/h460-nz89

Friston_Friedman_Fortier_2018_of_woodlice_and_men.pdf

MVEE: A Framework for Evolutionary Studies

⁠

Zenodo

⁠

10.5281/zenodo.13999298

MVEE_2018.pdf

17

2

The MutAnts are here

⁠

Cell

⁠

10.1016/j.cell.2017.07.046

FriedmanGordonLuo_MutAnts_2017.pdf

Two lineages that need each other

⁠

Molecular Ecology

⁠

10.1111/mec.13964

Molecular Ecology - 2017 - Gordon - Two lineages that need each other.pdf

16

3

“Context-dependent expression of the foraging gene in field colonies of ants: the interacting roles of age, environment and task”

⁠

Proc. Royal Soc. B.

⁠

10.1098/rspb.2016.0841

Ingram_2016_Circadian_foraging.pdf

“Ant Genetics: Reproductive Physiology, Worker Morphology, and Behavior”

⁠

Annual Reviews Neuroscience

⁠

10.1146/annurev-neuro-070815-013927

Friedman_Gordon_2016_Ant_Genetics_review.pdf

"Influence of Nuclear Structure on the formation of radiation-induced lethal lesions"

⁠

Int. J. Radiation Biology

⁠

10.3109/09553002.2016.1144941

Friedman_nuclear_structure_2016.pdf

15

3

“Could Ehrlichial Infection Cause Some of the Changes Associated with Leukemia, Myelodysplastic Diseases and Autoimmune Disorders, and Offer Antibiotic Treatment Options?”

⁠

Medical Hypotheses

⁠

10.1016/j.mehy.2015.09.015

Kallick_2015_Ehrlichia.pdf

"Large Scale Coding Sequence Change Underlies the Evolution of Post-developmental Novelty in Honey Bees"

⁠

Mol. Bio. and Evolution

⁠

10.1093/molbev/msu292

Jasper_2014_HoneyBeeGeneExpression.pdf

“Commentary: Portuguese crypto-Jews: the genetic heritage of a complex history”