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Updated in September 2022
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22
Book
Structuring the Information Commons: Open Standards and Cognitive Security
RJ Cordes
Scott David
DAF
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Active InferenceCognitive SecurityOnline TeamsCatechismCyberphysicalRhetoricEcologyConflictApplications
Book by
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COGSEC2022-StructuringtheInformationCommons.pdf
978-1-7364269-3-7
Paper
An Active Inference Ontology for Decentralized Science: from Situated Sensemaking to the Epistemic Commons
DAF
Shaun Applegate-Swanson
Arhan Choudhury
RJ Cordes
Bleu Knight
Ivan Metelkin
Alex Vyatkin
Shady El Damaty
Avel Guénin—Carlut
Siddhant Shrivastava
Amit Kumar Singh
Jakub Smékal
Caleb Tuttle
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Active InferenceComputationalOnline TeamsCyberphysicalBayesianEcologyDeSciApplications
Preprint
ActInf-DeSci-AEOS-2022.pdf
10.5281/zenodo.6320574
Tracking Public Sensemaking through Rhetorical Annotation of Image Memes
Mridula Mascarenhas
RJ Cordes
Bleu Knight
Sarah Murphy
DAF
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Online TeamsMemesInformation EnvironmentRhetoric
Preprint
ECOMEME2-v1.0.pdf
10.5281/zenodo.6904427
TrustFinder: Recommendations for a Community-Based System for Finding Trusted Sources and Evaluating Claims
RJ Cordes
Scott David
DAF
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Online TeamsCyberphysicalActive InferenceDeSciApplicationsDecentralized Systems
Preprint
VIE-IG_1.pdf
10.5281/zenodo.7093837
From Users to (Sense)Makers: On the Pivotal Role of Stigmergic Social Annotation in the Quest for Collective Sensemaking
Ronen Tamari
DAF
William Fischer
Lauren Hebert
Dafna Shahaf
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StigmergyAttentionAnnotationDecentralized Systems
Preprint
Tamari_Friedman_et_al_2022.pdf
10.48550/arXiv.2205.06345
Ant Pheremones
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AntsComputationalStigmergy
In review Sept. 2022
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Evolution & FEP
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Active InferenceFree Energy PrincipleBiology
In review Sept. 2022
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Poster
Active Blockference: cadCAD with Active Inference for cognitive systems modeling
Jakub Smékal
Arhan Choudhury
Amit Kumar Singh
Shady El Damaty
DAF
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Active InferenceComputationalCognitive SecurityOnline TeamsCyberphysicalDecentralized Systems
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Active Blockference _ IWAI 2022 Poster.pdf
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21
Book
“Narrative Information Ecosystems: Conflict and Trust on the Endless Frontier”
RJ Cordes
DAF
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CatechismInnovationOnline TeamsActive InferenceCognitive SecurityNarrativeConflictMilitary
Book by
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NIE_21_Cordes_Friedman.pdf
978-1-7364269-2-0
Playbook
"The Facilitator's Catechism Playbook”
RJ Cordes
DAF
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CatechismInnovationOnline Teams
Preprint
FaciliatorsCatechismPlaybook.pdf
10.5281/zenodo.4579414
"Innovator’s Digital Playbook”
RJ Cordes
DAF
Monica Kang
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CatechismInnovationOnline Teams
Preprint
Innovators-Digital-Playbook.pdf
978-0-578-31739-7
Paper
“Active Inferants: An Active Inference Framework for Ant Colony Behavior”
DAF
Alex Tschantz
Maxwell Ramstead
Axel Constant
Karl Friston
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Active InferenceAntsComputationalBiologyStigmergy
Front. Behav. Neurosci.
Friedman_2021_InferAnts.pdf
10.3389/fnbeh.2021.647732
"Digital Rhetorical Ecosystem Analysis: Sensemaking of Digital Memetic Discourse"
DAF
RJ Cordes
Mridula Mascarenhas
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RhetoricEcologyOnline Teams
Preprint
ECOMEME v1.1.pdf
10.5281/zenodo.5573947
“Transcript of: Karl Friston, 1st Applied Active Inference Symposium, Active Inference Lab, June 21, 2021”
Karl Friston
Dave Douglass
Maria Luiza Iennaco de Vasconcelos
Stephen Sillett
Lorena Sganzerla
Dean Tickles
Ivan Metelkin
Alex Vyatkin
DAF
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Free Energy PrincipleBiologyActive InferenceOnline TeamsPhilosophyEducation
Preprint
v2 - Karl Friston, Applied Active Inference Symposium, ActInfLab, June 21, 2021.pdf
10.5281/zenodo.5797041
"Collaborative Writing for Catechism-Based Teams”
RJ Cordes
DAF
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CatechismOnline Teams
Preprint
C3PO.pdf
10.5281/zenodo.4633921
"Knowledge Management Archipelago”
RJ Cordes
DAF
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Online TeamsComputational
Preprint
KnowledgeManagementArchipelago_1_0.pdf
10.5281/zenodo.5034809
“Narrative Information Management”
RJ Cordes
DAF
Alexandra Mikhailova
Shaun Applegate-Swanson
Bleu Knight
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NarrativeCognitive Security
Preprint
NIM21 v1.1.pdf
10.5281/zenodo.5573287
"Active Inference in Modeling Conflict”
RJ Cordes
DAF
Scott David
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Active InferenceCyberphysicalCognitive SecurityConflictMilitary
Preprint
AIC v1_2.pdf
10.5281/zenodo.5759807
20
Book
“The Great Preset: Remote Teams and Operational Art”
RJ Cordes
DAF
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Cognitive SecurityOnline TeamsCyberphysical
Book by
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GreatPreset_Friedman_Cordes_2020.pdf
978-1-7364269-0-6
Paper
“Active Inference & Behavior Engineering for Teams”
Alex Vyatkin
Ivan Metelkin
Alexandra Mikhailova
RJ Cordes
DAF
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Active InferenceOnline TeamsComputational
Preprint
AIN1_Act_Inf_Narratives_v1.pdf
10.5281/zenodo.4021163
“Gene expression variation in the brains of harvester ant foragers is associated with collective behavior”
DAF
Ryan York
Austin Hilliard
Deborah Gordon
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GeneticsAnts
Communications Biology
Friedman_York_PogoGeneExpress_2020.pdf
10.1038/s42003-020-0813-8
“Distributed physiology and the molecular basis of social life in eusocial insects”
DAF
Tim Linksvayer
Brian Johnson
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AntsBiology
Hormones & Behavior
Friedman_DistributedPhysiology_2020.pdf
10.1016/j.yhbeh.2020.104757
“Measurement of natural variation of neurotransmitter tissue content in red harvester ant brains among different colonies.”
Mimi Shin
DAF
Deborah Gordon
BJ Venton
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Ants
Analytical and Bioanalytical Chemistry
Shin2020_Article_MeasurementOfNeurotransmitters.pdf
10.1007/s00216-019-02355-3
“The Facilitator's Catechism”
RJ Cordes
DAF
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CatechismOnline TeamsMilitaryCognitive Security
Preprint
The Facilitators Catechismv2.pdf
10.5281/zenodo.4203765
“Infinite Games for Infinite Teams”
RJ Cordes
DAF
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,
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ComputationalCognitive Security
COGSEC / Polyplexus
infinite_games_for_infinite_teams.pdf
None
“Emergent Teams for Complex Threats”
RJ Cordes
DAF
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Cognitive SecurityOnline TeamsMilitary
Preprint
CordesFriedman2020_Emergent_Teams.pdf
10.5281/zenodo.3986085
“Reimagining Maps”
RJ Cordes
DAF
Mikel Maron
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MapsInnovationOnline Teams
Preprint
Reimagining Maps.pdf
10.5281/zenodo.4170026
“The Innovator’s Catechism”
Steven Phelan
RJ Cordes
DAF
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CatechismInnovation
Preprint
The Innovators Catechism.pdf
10.5281/zenodo.4383230
“The neuroscience of decision making”
Timothy Hanks
Alexandra Mikhailova
DAF
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Bayesian
ALIUS Bulletin
theneuroscienceofdecisionmaking_tdhanks.pdf
10.34700/8pg4-0h12
Course
"How to use Keybase for remote teams”
DAF
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Online TeamsEducation
Udemy
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"Communication for Remote Teams”
DAF
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Online TeamsEducation
Udemy
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19
Paper
“The physiology of forager hydration and variation among harvester ant (Pogonomyrmex barbatus) colonies in collective foraging“
DAF
Deborah Gordon
Mike Greene
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AntsBiology
Science Reports
Friedman_2019_Pogo_Humidity.pdf
10.1038/s41598-019-41586-3
“Dennett Explained”
Daniel Dennett
Brendan Fleig-Goldstein
DAF
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Philosophy
ALIUS Bulletin
ALIUS_bulletin03-dennett_2019.pdf
10.34700/7gkw-zh08
“The ant colony as a test for scientific theories of consciousness”
Eirik Søvik
DAF
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AntsPhilosophy
Synthese
Friedman-Søvik2021_Article_TheAntColonyAsATestForConsciousness.pdf
10.1007/s11229-019-02130-y
PhD Dissertation
Behavioral, Physiological, and Transcriptomic Variation Among Colonies of the Red Harvester Ant (Pogonomyrmex barbatus)
DAF
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AntsBiologyEcology
PhD Dissertation
Friedman_2019_PhD_Dissertation_Overview.pdf
18
Paper
"Partner Pen Play in Parallel (PPPiP): A New PPPiParadigm for Relationship Improvement"
Alexandra Mikhailova
DAF
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Art
Arts
PPPiP_2018_Mikhailova_Friedman.pdf
10.3390/arts7030039
“Foraging behavior and locomotion of the invasive Argentine ant from winter aggregations”
Ben Burford
Ga-il Lee
DAF
E Brachmann
Rebia Khan
Dylan MacArthur-Waltz
Aiden McCarty
Deborah Gordon
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AntsBiology
PLoS One
Burford_2018_Argentine_Foraging.pdf
10.1371/journal.pone.0202117
“The Role of Dopamine in the Collective Regulation of Foraging in Harvester Ants”
DAF
Anna Pilko
Dorota Skowronska-Krawczy
Karolina M Krasinska
J Parker
J Hirsh
Deborah Gordon
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Ants
iScience.
Friedman_2018_Dopamine_Foraging_Pogo.pdf
10.1016/j.isci.2018.09.001
“Of woodlice and men: A Bayesian account of cognition, life and consciousness”
Karl Friston
Martin Fortier
DAF
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Active Inference
ALIUS Bulletin
Friston_Friedman_Fortier_2018_of_woodlice_and_men.pdf
10.34700/h460-nz89
17
Paper
“Two lineages that need each other"
DAF
Deborah Gordon
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AntsGenetics
Molecular Ecology
Molecular Ecology - 2017 - Gordon - Two lineages that need each other.pdf
10.1111/mec.13964
“The MutAnts are here”
DAF
Liqun Luo
Deborah Gordon
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AntsGenetics
Cell
FriedmanGordonLuo_MutAnts_2017.pdf
10.1016/j.cell.2017.07.046
16
Paper
“Ant Genetics: Reproductive Physiology, Worker Morphology, and Behavior”
DAF
Deborah Gordon
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AntsGenetics
Annual Reviews Neuroscience
Friedman_Gordon_2016_Ant_Genetics_review.pdf
10.1146/annurev-neuro-070815-013927
"Influence of Nuclear Structure on the formation of radiation-induced lethal lesions"
DAF
Lauren Tait
Andrew Vaughan
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Genetics
Int. J. Radiation Biology
Friedman_nuclear_structure_2016.pdf
10.3109/09553002.2016.1144941
“Context-dependent expression of the foraging gene in field colonies of ants: the interacting roles of age, environment and task”
KK Ingram
Mike Greene
J Kahler
S Peteru
Deborah Gordon
DAF
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AntsGenetics
Proc. Royal Soc. B.
Ingram_2016_Circadian_foraging.pdf
10.1098/rspb.2016.0841
15
Paper
“Commentary: Portuguese crypto-Jews: the genetic heritage of a complex history”
AW Marcus
Emily Ebel
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Genetics
Frontiers in Genetics
Marcus_Crypto-Jews_2015.pdf
10.3389/fgene.2015.00261
“Could Ehrlichial Infection Cause Some of the Changes Associated with Leukemia, Myelodysplastic Diseases and Autoimmune Disorders, and Offer Antibiotic Treatment Options?”
CA Kallick
MBA Nyindo
DAF
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Genetics
Medical Hypotheses
Kallick_2015_Ehrlichia.pdf
10.1016/j.mehy.2015.09.015
14
Paper
"Large Scale Coding Sequence Change Underlies the Evolution of Post-developmental Novelty in Honey Bees"
WC Jasper
Tim Linksvayer
Joel Atallah
DAF
JC Chiu
Brian Johnson
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BeesGenetics
Mol. Bio. and Evolution
Jasper_2014_HoneyBeeGeneExpression.pdf
10.1093/molbev/msu292
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