Research
Updated in March 2023
Publications
20__
Type
Title
Collaborators
Link
Full text PDF
Keywords
Venue
DOI or ISBN
23
Paper
3
Experimental Entomology in the Age of Video
DAF
Judith Wexler
Sebastian Alvarado
AntsBiologyCyberphysicalBeesEcologyApplications
JoVE
e65002
A single-pheromone model accounts for empirical patterns of ant colony foraging previously modeled using two pheromones
Eric Saund
DAF
AntsComputationalBiologyStigmergyDecentralized SystemsBehavior
10.1016/j.cogsys.2023.02.005
A variational synthesis of evolutionary and developmental dynamics
Karl Friston
DAF
Axel Constant
Bleu Knight
Thomas Parr
John Campbell
Active InferenceComputationalBiologyBayesianGeneticsEcologyFree Energy Principle
arXiv
10.48550/arXiv.2303.04898
Presentation
2
William Blake & Buckminster Fuller: Lives in Juxtaposition (A study in Comprehensivity)
DAF
BlakeFullerSynergeticsComprehensivityHistoryArtPhilosophy
Preprint
10.5281/zenodo.7514368
Monitoring memetic sense-making across digital publics: Combining rhetorical analysis and ecological frameworks for gathering and analyzing image-memes
Mridula Mascarenhas
DAF
RJ Cordes
RhetoricMemesDecentralized SystemsCognitive SecurityCyberphysical
22
Paper
8
The Free Energy Principle & Active Inference: a Systematic Literature Analysis
Bleu Knight
RJ Cordes
DAF
Active InferenceBiologyNarrativePhilosophyFree Energy PrincipleDeSci
Preprint
10.5281/zenodo.7449368
An Active Inference Ontology for Decentralized Science: from Situated Sensemaking to the Epistemic Commons
DAF
Shaun Applegate-Swanson
Arhan Choudhury
RJ Cordes
Bleu Knight
Ivan Metelkin
Alex Vyatkin
Shady El Damaty
Avel Guénin—Carlut
Siddhant Shrivastava
Amit Kumar Singh
Jakub Smékal
Caleb Tuttle
Active InferenceComputationalOnline TeamsCyberphysicalBayesianEcologyDeSciApplications
Preprint
10.5281/zenodo.6320574
Catechism for: "Towards Active Diffusion: A Tale of Multiple (den)Cities"
Jakub Smékal
DAF
Active InferenceDiffusion ModelsArtComputationalFree Energy PrincipleApplicationsInformation Environment
Preprint
10.5281/zenodo.7443848
Tracking Public Sensemaking through Rhetorical Annotation of Image Memes
Mridula Mascarenhas
RJ Cordes
Bleu Knight
Sarah Murphy
DAF
Online TeamsMemesInformation EnvironmentRhetoric
Preprint
10.5281/zenodo.6904427
TrustFinder: Recommendations for a Community-Based System for Finding Trusted Sources and Evaluating Claims
RJ Cordes
Scott David
DAF
Online TeamsCyberphysicalActive InferenceDeSciApplicationsDecentralized Systems
Preprint
10.5281/zenodo.7093837
On free will or the lack thereof
Robert Sapolsky
Alexandra Mikhailova
DAF
Free WillNeuroscienceBehaviorPhilosophyBiology
10.5281/zenodo.7394901
From Users to (Sense)Makers: On the Pivotal Role of Stigmergic Social Annotation in the Quest for Collective Sensemaking
Ronen Tamari
DAF
William Fischer
Lauren Hebert
Dafna Shahaf
StigmergyAttentionAnnotationDecentralized Systems
Preprint
10.48550/arXiv.2205.06345
Predictive Processing Interpretation of the Mirror Test and Implications of a Reflection Prediction for Human Cognition
Sean O'Connor
DAF
Active InferenceBiologyBayesianAttentionMirror Test
Preprint
10.5281/zenodo.7377256
Book
2
DAF
Alexandra Mikhailova
Other authors
ArtInnovationNarrative
Collaborative art book
None
Structuring the Information Commons: Open Standards and Cognitive Security
RJ Cordes
Scott David
DAF
Other authors
Active InferenceCognitive SecurityOnline TeamsCatechismCyberphysicalRhetoricEcologyConflictApplications
978-1-7364269-3-7
Poster
1
Active Blockference: cadCAD with Active Inference for cognitive systems modeling
Jakub Smékal
Arhan Choudhury
Amit Kumar Singh
Shady El Damaty
DAF
Active InferenceComputationalCognitive SecurityOnline TeamsCyberphysicalDecentralized Systems
21
Paper
7
“Active Inferants: An Active Inference Framework for Ant Colony Behavior”
DAF
Alex Tschantz
Maxwell Ramstead
Axel Constant
Karl Friston
Active InferenceAntsComputationalBiologyStigmergy
10.3389/fnbeh.2021.647732
"Digital Rhetorical Ecosystem Analysis: Sensemaking of Digital Memetic Discourse"
DAF
RJ Cordes
Mridula Mascarenhas
RhetoricEcologyOnline Teams
Preprint
10.5281/zenodo.5573947
“Transcript of: Karl Friston, 1st Applied Active Inference Symposium, Active Inference Lab, June 21, 2021”
Karl Friston
Dave Douglass
Maria Luiza Iennaco de Vasconcelos
Stephen Sillett
Lorena Sganzerla
Dean Tickles
Ivan Metelkin
Alex Vyatkin
DAF
Free Energy PrincipleBiologyActive InferenceOnline TeamsPhilosophyEducation
Preprint
10.5281/zenodo.5797041
"Collaborative Writing for Catechism-Based Teams”
RJ Cordes
DAF
CatechismOnline Teams
Preprint
10.5281/zenodo.4633921
"Knowledge Management Archipelago”
RJ Cordes
DAF
Online TeamsComputational
Preprint
10.5281/zenodo.5034809
“Narrative Information Management”
RJ Cordes
DAF
Alexandra Mikhailova
Shaun Applegate-Swanson
Bleu Knight
NarrativeCognitive Security
Preprint
10.5281/zenodo.5573287
"Active Inference in Modeling Conflict”
RJ Cordes
DAF
Scott David
Active InferenceCyberphysicalCognitive SecurityConflictMilitary
Preprint
10.5281/zenodo.5759807
Playbook
2
Book
1
“Narrative Information Ecosystems: Conflict and Trust on the Endless Frontier”
RJ Cordes
DAF
CatechismInnovationOnline TeamsActive InferenceCognitive SecurityNarrativeConflictMilitary
978-1-7364269-2-0
20
Book
1
“The Great Preset: Remote Teams and Operational Art”
RJ Cordes
DAF
Cognitive SecurityOnline TeamsCyberphysical
978-1-7364269-0-6
Course
2
Paper
10
“Active Inference & Behavior Engineering for Teams”
Alex Vyatkin
Ivan Metelkin
Alexandra Mikhailova
RJ Cordes
DAF
Active InferenceOnline TeamsComputational
Preprint
10.5281/zenodo.4021163
“Gene expression variation in the brains of harvester ant foragers is associated with collective behavior”
DAF
Ryan York
Austin Hilliard
Deborah Gordon
GeneticsAnts
10.1038/s42003-020-0813-8
“Distributed physiology and the molecular basis of social life in eusocial insects”
DAF
Tim Linksvayer
Brian Johnson
AntsBiology
10.1016/j.yhbeh.2020.104757
“Measurement of natural variation of neurotransmitter tissue content in red harvester ant brains among different colonies.”
Mimi Shin
DAF
Deborah Gordon
BJ Venton
Ants
10.1007/s00216-019-02355-3
“The Facilitator's Catechism”
RJ Cordes
DAF
CatechismOnline TeamsMilitaryCognitive Security
Preprint
10.5281/zenodo.4203765
“Infinite Games for Infinite Teams”
RJ Cordes
DAF
ComputationalCognitive Security
COGSEC / Polyplexus
None
“Emergent Teams for Complex Threats”
RJ Cordes
DAF
Cognitive SecurityOnline TeamsMilitary
Preprint
10.5281/zenodo.3986085
“Reimagining Maps”
RJ Cordes
DAF
Mikel Maron
MapsInnovationOnline Teams
Preprint
10.5281/zenodo.4170026
“The Innovator’s Catechism”
Steven Phelan
RJ Cordes
DAF
CatechismInnovation
Preprint
10.5281/zenodo.4383230
“The neuroscience of decision making”
Timothy Hanks
Alexandra Mikhailova
DAF
Bayesian
10.34700/8pg4-0h12
19
Paper
3
“The physiology of forager hydration and variation among harvester ant (Pogonomyrmex barbatus) colonies in collective foraging“
DAF
Deborah Gordon
Mike Greene
AntsBiology
10.1038/s41598-019-41586-3
“Dennett Explained”
Daniel Dennett
Brendan Fleig-Goldstein
DAF
Philosophy
10.34700/7gkw-zh08
“The ant colony as a test for scientific theories of consciousness”
Eirik Søvik
DAF
AntsPhilosophy
10.1007/s11229-019-02130-y
PhD Dissertation
1
DAF
AntsBiologyEcology
PhD Dissertation
18
Paper
4
"Partner Pen Play in Parallel (PPPiP): A New PPPiParadigm for Relationship Improvement"
Alexandra Mikhailova
DAF
Art
10.3390/arts7030039
“Foraging behavior and locomotion of the invasive Argentine ant from winter aggregations”
Ben Burford
Ga-il Lee
DAF
E Brachmann
Rebia Khan
Dylan MacArthur-Waltz
Aiden McCarty
Deborah Gordon
AntsBiology
10.1371/journal.pone.0202117
“The Role of Dopamine in the Collective Regulation of Foraging in Harvester Ants”
DAF
Anna Pilko
Dorota Skowronska-Krawczy
Karolina M Krasinska
J Parker
J Hirsh
Deborah Gordon
Ants
10.1016/j.isci.2018.09.001
“Of woodlice and men: A Bayesian account of cognition, life and consciousness”
Karl Friston
Martin Fortier
DAF
Active Inference
ALIUS Bulletin
10.34700/h460-nz89
17
16
Paper
3
“Ant Genetics: Reproductive Physiology, Worker Morphology, and Behavior”
DAF
Deborah Gordon
AntsGenetics
10.1146/annurev-neuro-070815-013927
"Influence of Nuclear Structure on the formation of radiation-induced lethal lesions"
DAF
Lauren Tait
Andrew Vaughan
Genetics
10.3109/09553002.2016.1144941
“Context-dependent expression of the foraging gene in field colonies of ants: the interacting roles of age, environment and task”
KK Ingram
Mike Greene
J Kahler
S Peteru
Deborah Gordon
DAF
AntsGenetics
10.1098/rspb.2016.0841
15
Paper
3
“Commentary: Portuguese crypto-Jews: the genetic heritage of a complex history”
AW Marcus
Emily Ebel
Genetics
10.3389/fgene.2015.00261
“Could Ehrlichial Infection Cause Some of the Changes Associated with Leukemia, Myelodysplastic Diseases and Autoimmune Disorders, and Offer Antibiotic Treatment Options?”
CA Kallick
MBA Nyindo
DAF
Genetics
10.1016/j.mehy.2015.09.015
"Large Scale Coding Sequence Change Underlies the Evolution of Post-developmental Novelty in Honey Bees"
WC Jasper
Tim Linksvayer
Joel Atallah
DAF
JC Chiu
Brian Johnson
BeesGenetics
10.1093/molbev/msu292
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