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Useful links

Use these links as a baseline for your search. You can use other resources not listed on this table. Always cite your references on KoboToolbox.

Links to query data

Links to query data

Source name

Description

Link

Bacteria Archaea

Eukaryote

Lichen

Virus

Microalgae

Diatoms

Macrofungi

Gram Stain

Microbiome

Metabolism

Oxygen use

Pathogen

Host

Human body site

Spore

Biofilm

Extremophile

Antimicrobial Resistance

Genetic material (Virus)

Strand (Virus)

Capsid (Virus)

Type of Growth

Morphology

Symmetry

Symbiosis

Lifestyle

Motility

UV Resistance

Toxicity

Antagonism Activity

Secondary Structures

Macroalgae

BACMAP Genome Atlas

BacMap is an interactive visual database containing hundreds of fully labeled, zoomable, and searchable maps of bacterial genomes.

http://bacmap.wishartlab.com

ATCC

American Type Culture Collection collects, stores, and distributes standard reference microorganisms.

https://www.atcc.org/About

VFDB

Virulence factors of pathogenic bacteria

http://www.mgc.ac.cn/cgi-bin/VFs/v5/main.cgi

PATRIC

The Pathosystems Resource Integration Center, provides integrated data of bacterial infectious diseases.

https://www.patricbrc.org

PHIDIAS

PHIDIAS has emphasized the study of those pathogens that cause various infectious diseases in humans and animals.

http://www.phidias.us/phinfo/index.php

eHOMD

Human Oral Microbiome Database provides a comprehensive curated information on the bacterial species present in the human aerodigestive tract

http://www.homd.org

GOLD

Genomes Online Database

https://gold.jgi.doe.gov/organisms

Virus-Host DB

Organizes data about the relationships between viruses and their hosts

https://www.genome.jp/virushostdb/

MycoBank Database

Fungal Databases, Nomenclature and Sepcies Banks

http://www.mycobank.org/defaultinfo.aspx?Page=Home

U.S National Fungus Collections

USDA Agricultural Research Service

https://nt.ars-grin.gov/fungaldatabases/

Lichen Portal

Consortium of North American Lichen Herbaria

https://lichenportal.org/cnalh/

EmsemblFungi

Ensembl Fungi is a browser for fungal genomes.

https://fungi.ensembl.org/species.html

GBIF

Global Biodiversity Information Facility. Free and open access to biodiversity data

https://www.gbif.org/species/search

UNITE

Communication and identification of DNA based fungal species

https://unite.ut.ee/index.php

BacDive

The Bacterial Diversity Metadatabase

https://bacdive.dsmz.de/advsearch

ViPR

Virus Pathogen Resource

https://www.viprbrc.org/brc/home.spg?decorator=vipr

ViruSITE

Integrated database for viral genomics

http://www.virusite.org/index.php?nav=browse

IRAM

Virus Capsids Database & Analysis Resources

https://iram.iau.edu.sa/#/

VIPERdb

Virus Particle ExploreR2

http://viperdb.scripps.edu/genuslist.php

ExProtDB

Extremophile Protein Database

https://exprotdb.com/organisms_browse.php

HaloDom

Halophilic organisms recorded to date

http://halodom.bio.auth.gr/?view=all_data

BaAMPs

Database dedicated to antimicrobial peptides (AMPs) specifically tested against microbial biofilms.

http://www.baamps.it

AlgaeBase

Algae Database

⁠

www.algaebase.org

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EOL

Microbe Database

⁠

www.eol.org/

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AlgaeVision

Image database for Algae

http://algaevision.myspecies.info/

DiatomBase

DiatomBase integrates the Catalogue of Diatom Names, and include names that have appeared since, as well as to include information about types, ecology, images, original descriptions and distributions

⁠

https://www.diatombase.org/index.php

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Diatoms of North America

Diatoms of North America documents the diversity of diatom species across the continent. Provides accurate information on diatom diversity, identification, ecology and geographic distribution.

https://diatoms.org/species