Useful links · Microbiology Guides

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BACMAP Genome Atlas

BacMap is an interactive visual database containing hundreds of fully labeled, zoomable, and searchable maps of bacterial genomes.

http://bacmap.wishartlab.com

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2

ATCC

American Type Culture Collection collects, stores, and distributes standard reference microorganisms.

https://www.atcc.org/About

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3

VFDB

Virulence factors of pathogenic bacteria

http://www.mgc.ac.cn/cgi-bin/VFs/v5/main.cgi

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4

PATRIC

The Pathosystems Resource Integration Center, provides integrated data of bacterial infectious diseases.

https://www.patricbrc.org

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5

PHIDIAS

PHIDIAS has emphasized the study of those pathogens that cause various infectious diseases in humans and animals.

http://www.phidias.us/phinfo/index.php

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6

eHOMD

Human Oral Microbiome Database provides a comprehensive curated information on the bacterial species present in the human aerodigestive tract

http://www.homd.org

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7

GOLD

Genomes Online Database

https://gold.jgi.doe.gov/organisms

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8

Virus-Host DB

Organizes data about the relationships between viruses and their hosts

https://www.genome.jp/virushostdb/

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9

MycoBank Database

Fungal Databases, Nomenclature and Sepcies Banks

http://www.mycobank.org/defaultinfo.aspx?Page=Home

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10

U.S National Fungus Collections

USDA Agricultural Research Service

https://nt.ars-grin.gov/fungaldatabases/

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11

Lichen Portal

Consortium of North American Lichen Herbaria

https://lichenportal.org/cnalh/

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12

EmsemblFungi

Ensembl Fungi is a browser for fungal genomes.

https://fungi.ensembl.org/species.html

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13

GBIF

Global Biodiversity Information Facility. Free and open access to biodiversity data

https://www.gbif.org/species/search

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14

UNITE

Communication and identification of DNA based fungal species

https://unite.ut.ee/index.php

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15

BacDive

The Bacterial Diversity Metadatabase

https://bacdive.dsmz.de/advsearch

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16

ViPR

Virus Pathogen Resource

https://www.viprbrc.org/brc/home.spg?decorator=vipr

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17

ViruSITE

Integrated database for viral genomics

http://www.virusite.org/index.php?nav=browse

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18

IRAM

Virus Capsids Database & Analysis Resources

https://iram.iau.edu.sa/#/

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19

VIPERdb

Virus Particle ExploreR2

http://viperdb.scripps.edu/genuslist.php

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20

ExProtDB

Extremophile Protein Database

https://exprotdb.com/organisms_browse.php

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21

HaloDom

Halophilic organisms recorded to date

http://halodom.bio.auth.gr/?view=all_data

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22

BaAMPs

Database dedicated to antimicrobial peptides (AMPs) specifically tested against microbial biofilms.

http://www.baamps.it

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23

AlgaeBase

Algae Database

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www.algaebase.org

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24

EOL

Microbe Database

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www.eol.org/

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25

AlgaeVision

Image database for Algae

http://algaevision.myspecies.info/

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26

DiatomBase

DiatomBase integrates the Catalogue of Diatom Names, and include names that have appeared since, as well as to include information about types, ecology, images, original descriptions and distributions

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https://www.diatombase.org/index.php

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Diatoms of North America

Diatoms of North America documents the diversity of diatom species across the continent. Provides accurate information on diatom diversity, identification, ecology and geographic distribution.

https://diatoms.org/species

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